Documentation
Dimension reduction
Deep dim reduction
SINDy
Markov state models
Hidden Markov Models
Clustering
Examples
Notebook examples
VAMPNets on Alanine Dipeptide
MSM on Prinz potential
Dimension reduction of double-wedge dataset
Coherent set comparison on Bickley jet
Datasets
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API docs
deeptime.base
deeptime.clustering
deeptime.sindy
deeptime.covariance
deeptime.decomposition
deeptime.markov
deeptime.markov.hmm
deeptime.markov.tools
deeptime.basis
deeptime.kernels
deeptime.data
deeptime.plots
deeptime.numeric
deeptime.util
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Latest release (0.4.5)
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Related Topics
Documentation overview
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VAMP vs. TICA vs. PCA
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VAMPNets on Alanine Dipeptide
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Notebook examples
¶
Notebooks containing some longer example systems.
VAMPNets on Alanine Dipeptide
MSM on Prinz potential
Dimension reduction of double-wedge dataset
Coherent set comparison on Bickley jet