Logo

Documentation

  • Dimension reduction
  • Deep dim reduction
  • SINDy
  • Markov state models
  • Hidden Markov Models
  • Clustering
  • Examples
  • Notebook examples
    • VAMPNets on Alanine Dipeptide
    • MSM on Prinz potential
    • Dimension reduction of double-wedge dataset
    • Coherent set comparison on Bickley jet
  • Datasets
  • For developers

API docs

  • deeptime.base
  • deeptime.clustering
  • deeptime.sindy
  • deeptime.covariance
  • deeptime.decomposition
  • deeptime.markov
  • deeptime.markov.hmm
  • deeptime.markov.tools
  • deeptime.basis
  • deeptime.kernels
  • deeptime.data
  • deeptime.plots
  • deeptime.numeric
  • deeptime.util

Other

  • Imprint
  • Software License

Version

  • Latest release (0.4.5)
  • Trunk version

Related Topics

  • Documentation overview
    • Previous: VAMP vs. TICA vs. PCA
    • Next: VAMPNets on Alanine Dipeptide
gh
deeptime @ GitHub

Notebook examplesΒΆ

Notebooks containing some longer example systems.

VAMPNets on Alanine Dipeptide
MSM on Prinz potential
Dimension reduction of double-wedge dataset
Coherent set comparison on Bickley jet