deeptime.markov.tools.flux.total_flux

deeptime.markov.tools.flux.total_flux(F, A=None)
Compute the total flux, or turnover flux, that is produced by

the flux sources and consumed by the flux sinks. [1]

Parameters:

  • F ((M, M) ndarray) – Matrix of flux values between pairs of states.

  • A (array_like (optional)) – List of integer state labels for set A (reactant)

Returns:

F – The total flux, or turnover flux, that is produced by the flux sources and consumed by the flux sinks

Return type:

float

References