deeptime.markov.tools.flux.to_netflux

deeptime.markov.tools.flux.to_netflux(flux)

Compute the netflux from the gross flux.

Parameters:

flux ((M, M) ndarray) – Matrix of flux values between pairs of states.

Returns:

netflux – Matrix of netflux values between pairs of states.

Return type:

(M, M) ndarray

Notes

The netflux or effective current is defined as

\[f_{ij}^{+}=\max \{ f_{ij}-f_{ji}, 0 \},\]

see [1].

\(f_{ij}\) is the flux for the transition from \(A\) to \(B\).

References