deeptime.markov.tools.flux.to_netflux¶
- deeptime.markov.tools.flux.to_netflux(flux)¶
Compute the netflux from the gross flux.
- Parameters:
flux ((M, M) ndarray) – Matrix of flux values between pairs of states.
- Returns:
netflux – Matrix of netflux values between pairs of states.
- Return type:
(M, M) ndarray
Notes
The netflux or effective current is defined as
\[f_{ij}^{+}=\max \{ f_{ij}-f_{ji}, 0 \},\]see [1].
\(f_{ij}\) is the flux for the transition from \(A\) to \(B\).
References