function compute_connected_sets¶
- deeptime.markov.compute_connected_sets(count_matrix, connectivity_threshold: float = 0, directed=True)¶
Computes the connected sets of a count matrix C.
- Parameters:
count_matrix ((N, N) np.ndarray) – count matrix
connectivity_threshold (float, optional, default=0) – Minimum count required to be included in the connected set computation.
directed (boolean) – True: Seek connected sets in the directed graph. False: Seek connected sets in the undirected graph.
- Returns:
A list of arrays, each array representing a connected set by enumerating the respective states. The list is in
descending order by size of connected set.